i read about the holy gift, and i actually went through the effort of editing the songs in audacity to make them flow better (as recommended in the guide). my final opinion is that yeah... the songs do fit well in a rearranged order, but this is after editing the intros and outros slightly, so it really doesn't seem like it was intentional. seriously, if you look for something hard enough you'll find it, even if it isn't there.
10,000 days is, in my opinion, a great album. and i absolutely love wings 1 & 2, but i still never understood why many people think of tool as the best band ever. a LOT of their material sounds samey, and while there are some brilliant tracks, there's also a lot of tracks which i feel the necessity to skip.